PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_009279-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 534aa    MW: 58512.9 Da    PI: 8.6899
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_009279-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.3e-054365123
                   EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                   + C++C+k F r  nL+ H r H
  NNU_009279-RA 43 FICEICNKGFQRDQNLQLHRRGH 65
                   89*******************88 PP

2zf-C2H211.10.0012119141123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k +  +s+ k H + +
  NNU_009279-RA 119 WKCDKCSKKYAVQSDWKAHSKIC 141
                    58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.15E-64265No hitNo description
Gene3DG3DSA:3.30.160.601.4E-54265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0224365IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8454365IPR007087Zinc finger, C2H2
PfamPF121716.5E-54365IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
SMARTSM0035523084114IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.9E-4107140IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-6114139No hitNo description
SMARTSM00355150119139IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MGCEAFLDMR IDEQNNRRLK EKNDPNAEVI ALSPTTLMAT NRFICEICNK GFQRDQNLQL  60
HRRGHNLPWK LRQRTSTEIR KKVYICPEPS CVHHNPARAL GDLTGIKKHF CRKHGEKKWK  120
CDKCSKKYAV QSDWKAHSKI CGTREYKCDC GTIFSRRDSF ITHRAFCDAL ADENNKVNQG  180
LVSSFGRSLP GQVSELMSSM PINTTNNASM GISEFNHPHA KNPLKPLAND LMSMPLKSLN  240
MAGGMFSSSA GALLGSPRGI NSSSSCLQLC ANSSSSFDGL NDTKNGRHLV GSAYMSATAL  300
LQKAAQMGAT ASSNINSSVM QKSFLSGMTG TDQLSGLRPS AYGGMQQDNS SYNHIQQQQT  360
DHSQLAAIEG GGFSSQFLQK STQETSSSTQ LFVETTAGVQ SSEMNDMGIF SGMFVGGDQN  420
HGFLKNIEQE NCSSTVMPSQ GRNINLGLEI PPTRLNPAGP SIRFGGNSGG DTMTVDFLGI  480
GGSGLRNLQE QQHQRQQQGL EFEAISQRRL QGLHQLQQQI SHGQAAMEKP MWDV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16981KLRQRTSTEIRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259675.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Protein indeterminate-domain 2
TrEMBLA0A061DSA60.0A0A061DSA6_THECC; Indeterminate(ID)-domain 2
STRINGVIT_07s0104g01620.t010.0(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-95indeterminate(ID)-domain 2